While the number of magazines publishing Christian fiction has shrunk lately, a few are still around and open to submissions from writers. Here are the ones I know of.

Havok (speculative fiction)

The Untold Podcast (speculative fiction)

Splickety (general fiction, including historical)

TWJ (all genres, including speculative)

Ancient Paths (most genres, including some speculative)

TRC (all genres, including speculative)

Clubhouse (children's, open to some speculative)

Clubhouse, Jr. (children's, general fiction)

Kids' Ark (children's, open to some speculative)

Also, the Splickety Blog, while not a magazine, publishes stories in all genres, including speculative.

Do you know of any other Christian fiction magazines?

Ruminate Magazine. It appears to be open to various genres, and it also publishes poetry.

Thanks for the link, Juliet!

This is awesome, really helpful! Thanks, Jon.

You're welcome!

I just added The Untold Podcast, a non-paying market for speculative stories.